Nolan’s first paper, “ROCCO: A Robust Method for Detection of Open Chromatin via Convex Optimization”, has been accepted by Bioinformatics and is now available: https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btad725/7455257. In this paper, he developed a method to identify consensus accessible chromatin regions across many samples. Congrats Nolan!
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- Research Areas
- Lab Members
- Software
- Allele-Aware ALignments for the Investigation of GeNetic Effects on Regulation (AA-ALIGNER)
- Cluster_Boost: Identifying Class Members in Severely Unbalanced Data
- DeFCoM: Analysis and Modeling of Transcription Factor Binding Sites Using a Motif-centric Genomic Footprinter
- F-Seq: A Feature Density Estimator for High-Throughput Sequence Tags
- GSAA: Gene Set Association
- Network-based Large-scale Identification oF disTal eQTL (NetLIFT)
- Datasets
- Molecular classification of Crohn’s disease reveals two clinically relevant subtypes
- Regulatory Elements Database
- DNaseI Annotated Regions of Nucleosome Stability (DARNS)
- High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
- Open chromatin defined by DNaseI and FAIRE
- Publications
- Journals
- Lab Opportunites
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